How to Fix
If youre missing a Phylake on the map go to the region on the map where the Phylake usually is and light one the braziers in any of the camps and the Phylake will go to it.
Phylake Locations- Lake Mareotis - The Outsider (Level 20)
- Sap-Meh Nome - Ptolemy's Fist (Level 22)
- Ineb-Hedget Nome - The Iron Ram (Level 24)
- Memphis - The Stranger (Level 28)
- Faiyum - Ra's Mercy (Level 30)
- Faiyum Oasis - The Hill (Level 32)
- Haueris Nome - Bane of Hathor (Level 35)
- Im-Khent Nome - Half Horn (Level 38)
- Isolated Desert - The Galatian (Level 40)
- Isolated Desert - The Iron Bull (Level 40)
Source: https://gameplay.tips/guides/1504-assassins-creed-origins.html
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